SNP and genotype calling - A practical guide

Here we use Docker containers to perform SNP calling with GATK.

Before start, it is important to highlight that all software here presented has several parameters that can be adjusted for each given scenario. Here, we will use the default settings, but for the best usage of each one of them, it is important to explore their specificity. So… use it carefully!

What you will need to run this tutorial

Linux system
At least 4G RAM
At least 7G HD
Docker
Internet connection

Access the tutorial here